STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4380Hypothetical protein. (145 aa)    
Predicted Functional Partners:
LO55_4381
RES domain protein.
 
 
 0.998
LO55_2853
RES domain protein.
  
 
 0.979
LO55_4382
Hypothetical protein.
 
     0.806
LO55_4379
snoaL-like domain protein.
       0.535
LO55_4333
HDOD domain protein.
  
     0.460
LO55_3556
Clp protease family protein.
  
     0.451
LO55_1535
Hypothetical protein.
  
     0.412
LO55_4485
Hypothetical protein.
  
     0.412
LO55_4948
Hypothetical protein.
  
     0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.