Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4380Hypothetical protein. (145 aa)    
Predicted Functional Partners:
LO55_4381
RES domain protein.
 
 
 0.994
LO55_2853
RES domain protein.
  
 
 0.883
LO55_4382
Hypothetical protein.
 
     0.812
LO55_4379
snoaL-like domain protein.
       0.537
LO55_4333
HDOD domain protein.
  
     0.460
LO55_3556
Clp protease family protein.
  
     0.451
LO55_1535
Hypothetical protein.
  
    0.420
LO55_4485
Hypothetical protein.
  
     0.412
LO55_4948
Hypothetical protein.
  
     0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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