Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4385HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein. (221 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
 
 0.811
LO55_4817
Hypothetical protein.
  
  
 0.784
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.761
ggpS
gluc_glyc_Psyn: glucosylglycerol-phosphate synthase.
    
 0.733
lysS
lysS_bact: lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.714
LO55_1001
4Fe-4S dicluster domain protein.
    
  0.664
LO55_3035
Alpha amylase, catalytic domain protein.
 
 
 0.590
LO55_2434
Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.
      0.565
cdase
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.549
LO55_2311
Alpha amylase, catalytic domain protein.
 
 
 0.547
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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