STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4399HDOD domain protein. (327 aa)    
Predicted Functional Partners:
LO55_4401
5'-nucleotidase family protein.
       0.773
LO55_1984
HDOD domain protein.
  
     0.766
LO55_1747
HDOD domain protein.
  
     0.712
LO55_4333
HDOD domain protein.
  
     0.662
LO55_1184
HDOD domain protein.
 
     0.606
LO55_3887
Hpt domain protein.
 
 
  0.522
LO55_4398
Putative lipoprotein.
       0.519
LO55_1824
GAF domain protein.
  
  
  0.508
LO55_4536
Response regulator.
 
 
  0.486
LO55_1185
Response regulator.
  
  
  0.483
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.