Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4402Methyltransferase domain protein. (223 aa)    
Predicted Functional Partners:
LO55_2173
Transcriptional regulator family protein.
 
 
   0.722
LO55_4173
Winged helix-turn-helix transcription repressor, HrcA DNA-binding family protein.
 
 
   0.704
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.683
LO55_358
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
   
 0.654
LO55_408
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
   
 0.654
LO55_588
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
   
 0.654
serB
serB: phosphoserine phosphatase SerB.
   
 0.639
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.570
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
       0.565
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
    
 0.558
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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