STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4409araC-like ligand binding domain protein. (128 aa)    
Predicted Functional Partners:
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
  
 
 0.966
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.966
LO55_3942
Glycosyl transferases group 1 family protein.
  
 
 0.747
LO55_1331
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
 
 
 0.738
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.696
galU
galU: UTP--glucose-1-phosphate uridylyltransferase.
    
 0.674
LO55_1610
marR family protein.
    
 0.672
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
  0.660
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
  0.656
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family.
    
 0.653
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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