STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxA-2Thioredoxin: thioredoxin. (145 aa)    
Predicted Functional Partners:
LO55_2754
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 0.954
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
 
 
 
 0.939
LO55_4742
Low molecular weight phosphotyrosine phosphatase family protein.
  
 
 0.934
LO55_3525
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 0.910
trxB
TRX_reduct: thioredoxin-disulfide reductase.
 
 0.902
LO55_1548
Glutamine amidotransferases class-II family protein.
   
 
 0.896
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 
 0.895
LO55_2172
Oxidoreductase.
  
 0.889
LO55_248
Flavin-binding monooxygenase-like family protein.
  
 0.889
LO55_346
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 0.889
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.