STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaRPHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR. (188 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.897
LO55_4456
Poly-beta-hydroxybutyrate polymerase family protein.
 
   
 0.791
LO55_3803
Alpha/beta hydrolase family protein.
 
   
 0.747
LO55_2385
Phasin: phasin family domain protein.
 
   
 0.725
phaZ
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
 
   
 0.579
phbB
acAcCoA_reduct: acetoacetyl-CoA reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.558
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.515
LO55_3108
Hypothetical protein.
 
   
 0.476
metC
cysta_beta_ly_B: cystathionine beta-lyase.
       0.471
LO55_3911
Patatin-like phospholipase family protein.
 
   
 0.425
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.