LO55_4424 protein (Massilia timonae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Massilia timonae

NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LO55_1199	LO55_1409	LO55_1199	LO55_1409	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Aminotransferase class IV family protein.	0.786
LO55_1199	LO55_1548	LO55_1199	LO55_1548	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Glutamine amidotransferases class-II family protein.	0.914
LO55_1199	LO55_1932	LO55_1199	LO55_1932	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.	0.907
LO55_1199	LO55_3426	LO55_1199	LO55_3426	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	4Fe-4S binding domain protein.	0.983
LO55_1199	LO55_4021	LO55_1199	LO55_4021	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.970
LO55_1199	LO55_4424	LO55_1199	LO55_4424	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	cys/Met metabolism PLP-dependent enzyme family protein.	0.783
LO55_1199	maeB	LO55_1199	LO55_3343	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	NADP-dependent malic enzyme.	0.907
LO55_1199	metH	LO55_1199	LO55_683	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.536
LO55_1409	LO55_1199	LO55_1409	LO55_1199	Aminotransferase class IV family protein.	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.786
LO55_1409	LO55_1548	LO55_1409	LO55_1548	Aminotransferase class IV family protein.	Glutamine amidotransferases class-II family protein.	0.607
LO55_1409	LO55_1932	LO55_1409	LO55_1932	Aminotransferase class IV family protein.	Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.	0.447
LO55_1409	LO55_3426	LO55_1409	LO55_3426	Aminotransferase class IV family protein.	4Fe-4S binding domain protein.	0.888
LO55_1409	LO55_4021	LO55_1409	LO55_4021	Aminotransferase class IV family protein.	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.786
LO55_1409	LO55_4424	LO55_1409	LO55_4424	Aminotransferase class IV family protein.	cys/Met metabolism PLP-dependent enzyme family protein.	0.791
LO55_1409	LO55_5088	LO55_1409	LO55_5088	Aminotransferase class IV family protein.	CBS domain protein.	0.445
LO55_1409	maeB	LO55_1409	LO55_3343	Aminotransferase class IV family protein.	NADP-dependent malic enzyme.	0.447
LO55_1409	metH	LO55_1409	LO55_683	Aminotransferase class IV family protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.532
LO55_1409	pheA	LO55_1409	LO55_47	Aminotransferase class IV family protein.	CM_P2: chorismate mutase.	0.943
LO55_1548	LO55_1199	LO55_1548	LO55_1199	Glutamine amidotransferases class-II family protein.	Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.	0.914
LO55_1548	LO55_1409	LO55_1548	LO55_1409	Glutamine amidotransferases class-II family protein.	Aminotransferase class IV family protein.	0.607

page 1 of 5

Server load: low (30%) [HD]

Share

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About