Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_4429SPFH domain / Band 7 family protein. (298 aa)    
Predicted Functional Partners:
LO55_4428
Hypothetical protein.
 
  
 0.977
LO55_2123
ATPase associated with various cellular activities family protein.
   
 0.842
hflB
ATP-dependent metallopeptidase HflB family protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.842
LO55_3001
Sensory box protein.
  
 
  0.796
LO55_3436
HAMP domain protein.
  
 
  0.796
coxB
coxB: cytochrome c oxidase, subunit II.
   
 
 0.787
LO55_4427
Translation initiation factor SUI1 family protein.
       0.757
LO55_3951
Insulinase family protein.
 
 0.717
LO55_1924
Insulinase family protein.
 
 0.714
LO55_2590
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
 
  0.710
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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