Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4432AAA ATPase domain protein. (296 aa)    
Predicted Functional Partners:
LO55_4433
pilus_MshL: pilus (MSHA type) biogenesis protein MshL.
 
  
 0.935
LO55_4435
Type II secretion system (T2SS), M family protein.
 
     0.922
LO55_4436
Hypothetical protein.
 
     0.910
LO55_4437
Hypothetical protein.
 
    0.888
LO55_4431
Tetratricopeptide repeat family protein.
 
     0.872
LO55_4434
Hypothetical protein.
       0.780
LO55_4438
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
     0.772
LO55_1660
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
     0.590
LO55_1319
pepcterm_ChnLen: polysaccharide chain length determinant, PEP-CTERM locus subfamily protein.
 
     0.570
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.570
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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