Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4436Hypothetical protein. (215 aa)    
Predicted Functional Partners:
LO55_4437
Hypothetical protein.
 
 0.996
LO55_4433
pilus_MshL: pilus (MSHA type) biogenesis protein MshL.
 
   
 0.957
LO55_4435
Type II secretion system (T2SS), M family protein.
 
   
 0.956
LO55_1044
Pilus assembly, PilO family protein.
  
 
 0.948
LO55_4431
Tetratricopeptide repeat family protein.
 
     0.943
LO55_1046
pilM: type IV pilus assembly PilM family protein.
  
 0.927
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
  
 
 0.913
LO55_5110
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
  
 
 0.913
LO55_4432
AAA ATPase domain protein.
 
     0.910
LO55_5112
Hypothetical protein.
 
 
 0.907
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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