STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4439Type II secretion system (T2SS), F family protein. (410 aa)    
Predicted Functional Partners:
LO55_4440
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein.
 
 
 0.988
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.952
LO55_2367
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein.
 
 
 0.952
pilB
type_IV_pilB: type IV-A pilus assembly ATPase PilB.
 
 
 0.952
LO55_5115
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein.
 
 
 0.952
LO55_460
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.892
LO55_4438
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
  
 0.868
LO55_4436
Hypothetical protein.
 
 
 
 0.857
LO55_4437
Hypothetical protein.
 
 
 
 0.852
LO55_1046
pilM: type IV pilus assembly PilM family protein.
 
 
 
 0.849
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.