Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_4455Universal stress family protein. (282 aa)    
Predicted Functional Partners:
LO55_4456
Poly-beta-hydroxybutyrate polymerase family protein.
 
     0.724
LO55_2144
Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein.
  
  
 0.539
LO55_2590
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
  
 0.537
LO55_1963
Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein.
  
  
 0.514
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.474
LO55_140
Sigma 54 modulation / S30EA ribosomal family protein.
  
  
 0.470
LO55_1907
ompW family protein.
 
  
 0.466
LO55_1410
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
 
  
 0.460
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
  
 0.412
deoA
Thymidine phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.
   
    0.406
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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