STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4456Poly-beta-hydroxybutyrate polymerase family protein. (602 aa)    
Predicted Functional Partners:
phaZ
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
 
  
 0.903
phaR
PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.791
phbB
acAcCoA_reduct: acetoacetyl-CoA reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.782
LO55_4737
Phosphate acetyl/butaryl transferase family protein.
 
 0.776
LO55_3108
Hypothetical protein.
 
  
  0.770
LO55_3109
Phosphate acetyl/butaryl transferase family protein.
 
 0.761
LO55_4455
Universal stress family protein.
 
     0.724
phbB-2
acAcCoA_reduct: acetoacetyl-CoA reductase family protein.
  
 
 0.718
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
     
 0.706
LO55_977
enoyl-CoA hydratase/isomerase family protein.
     
 0.706
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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