Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_4469Peptidase M20/M25/M40 family protein. (480 aa)    
Predicted Functional Partners:
LO55_3832
Peptidase M20/M25/M40 family protein.
  
     0.675
LO55_1196
Zinc carboxypeptidase family protein.
  
     0.631
LO55_201
Peptidase M28 family protein.
  
     0.628
LO55_1167
Peptidase M28 family protein.
  
     0.607
LO55_1161
Zinc carboxypeptidase family protein.
  
     0.601
LO55_4869
Alpha/beta hydrolase fold family protein; Belongs to the type-B carboxylesterase/lipase family.
 
 0.536
LO55_62
Dipeptidyl peptidase IV.
  
     0.514
LO55_4470
Calcineurin-like phosphoesterase family protein.
       0.512
LO55_1148
Cold-active aminopeptidase.
  
 
   0.500
LO55_1850
Hypothetical protein.
  
     0.484
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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