Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LO55_4479Major Facilitator Superfamily protein. (421 aa)    
Predicted Functional Partners:
LO55_2749
ACT domain protein.
    
  0.590
LO55_4480
Stage II sporulation E family protein.
       0.586
LO55_759
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.583
asd
Asd_gamma: aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
     
  0.554
LO55_4478
Acetyltransferase domain protein.
       0.542
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
  0.472
LO55_3022
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
    0.419
LO55_1409
Aminotransferase class IV family protein.
   
 
 0.414
LO55_4667
Major Facilitator Superfamily protein.
  
  
 0.405
pheA
CM_P2: chorismate mutase.
   
 
 0.400
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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