Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4512Hypothetical protein. (427 aa)    
Predicted Functional Partners:
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.668
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
   
 0.629
coxB-2
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
  0.564
LO55_3942
Glycosyl transferases group 1 family protein.
 
  
 0.509
LO55_4210
GDSL-like Lipase/Acylhydrolase family protein.
  
 
  0.504
LO55_4511
acyl-ACP thioesterase family protein.
       0.498
LO55_2563
Right handed beta helix region family protein.
  
     0.484
LO55_2954
GDSL-like Lipase/Acylhydrolase family protein.
    
  0.415
LO55_3156
GDSL-like Lipase/Acylhydrolase family protein.
    
  0.415
LO55_3676
GDSL-like Lipase/Acylhydrolase family protein.
    
  0.415
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.