Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LO55_1786 | LO55_3433 | LO55_1786 | LO55_3433 | Hypothetical protein. | Eukaryotic DNA topoisomerase I, catalytic core family protein. | 0.500 |
| LO55_1786 | ku | LO55_1786 | LO55_4518 | Hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.579 |
| LO55_1786 | ligD | LO55_1786 | LO55_4521 | Hypothetical protein. | NHEJ_ligase_prk: DNA ligase D. | 0.732 |
| LO55_2705 | LO55_3433 | LO55_2705 | LO55_3433 | DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family. | Eukaryotic DNA topoisomerase I, catalytic core family protein. | 0.645 |
| LO55_2705 | ku | LO55_2705 | LO55_4518 | DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.667 |
| LO55_2705 | ligD | LO55_2705 | LO55_4521 | DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family. | NHEJ_ligase_prk: DNA ligase D. | 0.746 |
| LO55_2791 | ku | LO55_2791 | LO55_4518 | Hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.546 |
| LO55_3433 | LO55_1786 | LO55_3433 | LO55_1786 | Eukaryotic DNA topoisomerase I, catalytic core family protein. | Hypothetical protein. | 0.500 |
| LO55_3433 | LO55_2705 | LO55_3433 | LO55_2705 | Eukaryotic DNA topoisomerase I, catalytic core family protein. | DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family. | 0.645 |
| LO55_3433 | ku | LO55_3433 | LO55_4518 | Eukaryotic DNA topoisomerase I, catalytic core family protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.566 |
| LO55_3433 | ligD | LO55_3433 | LO55_4521 | Eukaryotic DNA topoisomerase I, catalytic core family protein. | NHEJ_ligase_prk: DNA ligase D. | 0.757 |
| LO55_4516 | LO55_4517 | LO55_4516 | LO55_4517 | GGDEF: diguanylate cyclase domain protein. | Short chain dehydrogenase family protein. | 0.511 |
| LO55_4516 | LO55_4519 | LO55_4516 | LO55_4519 | GGDEF: diguanylate cyclase domain protein. | Putative membrane protein. | 0.444 |
| LO55_4516 | ku | LO55_4516 | LO55_4518 | GGDEF: diguanylate cyclase domain protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.444 |
| LO55_4517 | LO55_4516 | LO55_4517 | LO55_4516 | Short chain dehydrogenase family protein. | GGDEF: diguanylate cyclase domain protein. | 0.511 |
| LO55_4517 | LO55_4519 | LO55_4517 | LO55_4519 | Short chain dehydrogenase family protein. | Putative membrane protein. | 0.661 |
| LO55_4517 | LO55_4520 | LO55_4517 | LO55_4520 | Short chain dehydrogenase family protein. | Catalase family protein; Belongs to the catalase family. | 0.486 |
| LO55_4517 | ku | LO55_4517 | LO55_4518 | Short chain dehydrogenase family protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.732 |
| LO55_4519 | LO55_4516 | LO55_4519 | LO55_4516 | Putative membrane protein. | GGDEF: diguanylate cyclase domain protein. | 0.444 |
| LO55_4519 | LO55_4517 | LO55_4519 | LO55_4517 | Putative membrane protein. | Short chain dehydrogenase family protein. | 0.661 |
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