Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_452Glycosyl hydrolases 31 family protein. (695 aa)    
Predicted Functional Partners:
LO55_458
eamA-like transporter family protein.
 
     0.859
LO55_454
Amidohydrolase family protein.
 
     0.827
LO55_453
deoR-like helix-turn-helix domain protein.
 
     0.700
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
    
 0.674
LO55_190
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
 
  
 0.670
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
     0.647
LO55_456
SIS domain protein.
 
     0.643
LO55_3815
Aldose 1-epimerase family protein.
    
 0.613
LO55_2303
Alpha amylase, catalytic domain protein.
 
 
 0.577
LO55_457
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
     0.571
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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