Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_453deoR-like helix-turn-helix domain protein. (281 aa)    
Predicted Functional Partners:
LO55_456
SIS domain protein.
 
   
 0.763
LO55_452
Glycosyl hydrolases 31 family protein.
 
     0.700
LO55_3073
FAD dependent oxidoreductase family protein.
 
  
 0.633
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.602
LO55_454
Amidohydrolase family protein.
 
     0.592
LO55_457
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
   
 0.591
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
     0.588
LO55_1007
Band 3 cytoplasmic domain protein.
 
  
 0.586
LO55_3462
FAD dependent oxidoreductase family protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.570
LO55_458
eamA-like transporter family protein.
 
     0.569
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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