Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_454Amidohydrolase family protein. (362 aa)    
Predicted Functional Partners:
LO55_458
eamA-like transporter family protein.
 
     0.920
LO55_456
SIS domain protein.
 
     0.850
LO55_452
Glycosyl hydrolases 31 family protein.
 
     0.827
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
     0.771
LO55_457
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
     0.767
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.720
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.684
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.684
LO55_459
tonB-Xanth-Caul: TonB-dependent receptor family protein.
       0.645
LO55_453
deoR-like helix-turn-helix domain protein.
 
     0.592
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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