Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4580Putative membrane protein. (325 aa)    
Predicted Functional Partners:
LO55_4579
ABC transporter family protein.
 
     0.950
LO55_4578
Bacterial regulatory s, gntR family protein.
 
     0.940
LO55_4582
Hypothetical protein.
       0.773
LO55_1829
traB family protein.
  
     0.743
LO55_432
tonB-dependent Receptor Plug domain protein.
  
     0.705
LO55_317
tonB dependent receptor family protein.
  
     0.696
LO55_1128
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
     0.694
LO55_377
Dienelactone hydrolase family protein.
  
     0.693
LO55_318
tonB dependent receptor family protein.
  
     0.689
LO55_2133
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein.
  
     0.663
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.