Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LO55_1102 | LO55_4796 | LO55_1102 | LO55_4796 | Phosphoribosyl transferase family protein. | 3'-5' exonuclease family protein. | 0.995 |
| LO55_1102 | rnr | LO55_1102 | LO55_4585 | Phosphoribosyl transferase family protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.761 |
| LO55_1102 | rph | LO55_1102 | LO55_2531 | Phosphoribosyl transferase family protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.972 |
| LO55_1102 | rplD | LO55_1102 | LO55_1091 | Phosphoribosyl transferase family protein. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| LO55_1102 | rpsA | LO55_1102 | LO55_42 | Phosphoribosyl transferase family protein. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.969 |
| LO55_1102 | rsmA | LO55_1102 | LO55_1806 | Phosphoribosyl transferase family protein. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.952 |
| LO55_2976 | rnr | LO55_2976 | LO55_4585 | NUDIX domain protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.850 |
| LO55_2976 | rph | LO55_2976 | LO55_2531 | NUDIX domain protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.822 |
| LO55_4796 | LO55_1102 | LO55_4796 | LO55_1102 | 3'-5' exonuclease family protein. | Phosphoribosyl transferase family protein. | 0.995 |
| LO55_4796 | rnr | LO55_4796 | LO55_4585 | 3'-5' exonuclease family protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.966 |
| LO55_4796 | rph | LO55_4796 | LO55_2531 | 3'-5' exonuclease family protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.999 |
| LO55_4796 | rplD | LO55_4796 | LO55_1091 | 3'-5' exonuclease family protein. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.977 |
| LO55_4796 | rpsA | LO55_4796 | LO55_42 | 3'-5' exonuclease family protein. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.999 |
| LO55_4796 | rsmA | LO55_4796 | LO55_1806 | 3'-5' exonuclease family protein. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.882 |
| LO55_94 | rnr | LO55_94 | LO55_4585 | NUDIX domain protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.850 |
| LO55_94 | rph | LO55_94 | LO55_2531 | NUDIX domain protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.822 |
| LO55_984 | rnr | LO55_984 | LO55_4585 | NUDIX domain protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.850 |
| LO55_984 | rph | LO55_984 | LO55_2531 | NUDIX domain protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.822 |
| rlmB | rnr | LO55_4584 | LO55_4585 | RNA 2'-O ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.964 |
| rlmB | rplD | LO55_4584 | LO55_1091 | RNA 2'-O ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.741 |
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