Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_459tonB-Xanth-Caul: TonB-dependent receptor family protein. (937 aa)    
Predicted Functional Partners:
LO55_458
eamA-like transporter family protein.
 
     0.810
LO55_1291
sapC family protein.
  
     0.756
LO55_2297
Lycopene cyclase family protein.
  
     0.752
LO55_455
badF/BadG/BcrA/BcrD ATPase family protein.
 
    0.739
LO55_1290
Cupin-like domain protein.
 
     0.736
LO55_1596
tonB dependent receptor family protein.
  
  
  0.734
LO55_456
SIS domain protein.
 
     0.730
LO55_457
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
       0.693
LO55_1121
Phytase family protein.
 
     0.666
LO55_2569
tonB dependent receptor family protein.
  
  
  0.657
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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