Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
clpVVI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family. (886 aa)    
Predicted Functional Partners:
LO55_4593
impA-related N-terminal family protein.
 
  
 0.960
LO55_4598
Hypothetical protein.
 
 
 0.942
LO55_4597
Hypothetical protein.
 
 
 0.934
LO55_2611
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
  
 
 0.931
LO55_4595
Lysozyme family protein; Gene 25-like.
 
  
 0.929
htpG
Hsp90 family protein; Molecular chaperone. Has ATPase activity.
  
 
 0.923
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.919
LO55_4596
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
 
 0.902
LO55_4307
Hsp70 family protein.
  
 
 0.900
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
 
 0.892
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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