STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_460Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (273 aa)    
Predicted Functional Partners:
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.919
dprA
dprA: DNA protecting protein DprA.
  
  
 0.913
LO55_4363
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.907
pilB
type_IV_pilB: type IV-A pilus assembly ATPase PilB.
 
 
 0.899
gspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.895
LO55_2367
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein.
 
 
 0.895
LO55_4440
Hypothetical protein; Type II secretion system (T2SS), E, N-terminal domain protein.
 
 
 0.895
LO55_37
Helix-hairpin-helix motif family protein.
   
  
 0.894
LO55_446
Type II secretion system (T2SS), F family protein.
 
  
 0.894
LO55_4439
Type II secretion system (T2SS), F family protein.
 
  
 0.892
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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