Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
LO55_4603BON domain protein. (262 aa)    
Predicted Functional Partners:
LO55_4604
Hypothetical protein.
 
  
 0.936
LO55_4605
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.920
LO55_4606
D-alanyl-D-alanine carboxypeptidase family protein.
 
     0.830
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.739
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.708
LO55_377
Dienelactone hydrolase family protein.
  
 0.702
LO55_2475
flgEFG_subfam: flagellar hook-basal body family protein.
   
 0.685
LO55_282
flgEFG_subfam: flagellar hook-basal body family protein.
   
 0.685
LO55_3597
Outer membrane family protein.
  
 
 0.659
LO55_4602
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.656
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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