Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4604Hypothetical protein. (323 aa)    
Predicted Functional Partners:
LO55_4605
Intracellular multiplication and macrophage-killing family protein.
 
 
 0.984
LO55_4602
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.942
LO55_4603
BON domain protein.
 
  
 0.936
LO55_1455
Hypothetical protein.
 
 
 0.903
LO55_4601
Hypothetical protein.
 
 
 0.902
LO55_4600
Type VI secretion lipofamily protein.
 
  
 0.896
LO55_4606
D-alanyl-D-alanine carboxypeptidase family protein.
 
     0.896
LO55_4598
Hypothetical protein.
 
 
 0.894
LO55_1456
Lysozyme family protein; Gene 25-like.
 
  
 0.892
LO55_4595
Lysozyme family protein; Gene 25-like.
 
  
 0.890
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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