STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4630hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family. (280 aa)    
Predicted Functional Partners:
LO55_4635
Hypothetical protein; N-terminal half of MaoC dehydratase family protein.
 
 
 0.962
LO55_4632
mmgE/PrpD family protein.
 
  
 0.945
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
  
 
 0.937
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.910
LO55_4633
coA-transferase III family protein; Belongs to the CoA-transferase III family.
 
 
 0.860
LO55_4634
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
 0.842
LO55_236
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.800
LO55_1932
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
  
 
 0.783
maeB
NADP-dependent malic enzyme.
  
 
 0.783
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 
 0.781
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.