Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phnD3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding family protein. (292 aa)    
Predicted Functional Partners:
phnC
ABC transporter family protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.998
phnE
phnE: phosphonate ABC transporter, permease protein PhnE.
 
 
 0.993
LO55_4692
Binding--dependent transport system inner membrane component family protein.
 
  
  0.968
LO55_3464
HAMP domain protein.
    
 0.803
LO55_3639
His Kinase A domain protein.
    
 0.803
LO55_2870
Response regulator.
    
 0.793
LO55_4536
Response regulator.
    
 0.793
LO55_4555
Sensory box protein.
    
 0.786
LO55_3282
Sensory box protein.
    
 0.776
LO55_4955
Sensory box protein.
    
 0.744
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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