STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4709Glycosyltransferase like 2 family protein. (309 aa)    
Predicted Functional Partners:
LO55_4708
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
 
 0.945
LO55_4710
Hypothetical protein.
 
 
 0.888
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.692
LO55_1330
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
 0.687
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.647
LO55_1331
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
 
  
 0.642
LO55_2191
Glycosyl transferase, group 2 family protein.
    
  0.612
LO55_253
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.594
LO55_1335
Aminotransferase class I and II family protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.592
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 
 0.589
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.