Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4740Dass: transporter, divalent anion:Na+ symporter family protein. (501 aa)    
Predicted Functional Partners:
LO55_4741
Bacterial regulatory, arsR family protein.
     
 0.516
sulP
sulP: sulfate permease family protein.
  
 
 0.479
LO55_236
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.476
LO55_1932
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
  
  
 0.475
maeB
NADP-dependent malic enzyme.
  
  
 0.475
arsB
Arsenite/antimonite efflux pump membrane family protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
     
 0.468
LO55_2051
SWIB/MDM2 domain protein.
    
   0.454
LO55_4739
Hypothetical protein.
       0.439
LO55_1627
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
     
 0.431
LO55_2043
Sulfate transporter family protein.
  
 
 0.420
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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