STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcEMalonate_gamma: biotin-independent malonate decarboxylase, gamma subunit. (238 aa)    
Predicted Functional Partners:
LO55_1502
D-ala D-ala ligase family protein.
  
 0.997
uca
Urea_carbox: urea carboxylase.
  
 0.997
mdcD
Malonate_beta: biotin-independent malonate decarboxylase, beta subunit.
 
 
 0.978
mdcA
mdcA: malonate decarboxylase, alpha subunit.
 
  
  0.976
mdcG
malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase.
 
     0.953
mdcC
Malonate_delta: malonate decarboxylase acyl carrier protein.
 
     0.953
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.952
LO55_4764
Acyl transferase domain protein.
 
 
 0.940
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.918
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.907
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.