Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4785swm_rep_I: cyanobacterial long repeat domain protein. (2671 aa)    
Predicted Functional Partners:
LO55_4786
Phage Tail Collar domain protein.
 
 
   0.888
LO55_1584
Matrixin family protein.
 
 
0.732
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.667
LO55_4109
Hemolysin-type calcium-binding repeat family protein.
  
     0.662
LO55_2211
Bacterial Ig-like domain family protein.
  
     0.647
LO55_5024
major_cap_HK97: phage major capsid protein, HK97 family.
 
 
   0.616
LO55_2203
type_I_hlyD: type I secretion membrane fusion, HlyD family protein.
 
  
 0.587
LO55_4363
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.554
LO55_5019
Phage head-tail joining family protein.
   
   0.543
LO55_5026
portal_HK97: phage portal protein, HK97 family.
   
   0.543
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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