Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4786Phage Tail Collar domain protein. (204 aa)    
Predicted Functional Partners:
LO55_4785
swm_rep_I: cyanobacterial long repeat domain protein.
 
 
   0.888
LO55_4788
Acetyltransferase family protein.
 
     0.793
LO55_5026
portal_HK97: phage portal protein, HK97 family.
   
 
 0.731
LO55_5019
Phage head-tail joining family protein.
  
   0.730
LO55_5024
major_cap_HK97: phage major capsid protein, HK97 family.
   
   0.727
LO55_3938
Acetyltransferase family protein.
 
     0.691
LO55_3648
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.686
LO55_1584
Matrixin family protein.
 
 
   0.638
LO55_111
rmlD substrate binding domain protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
   
   0.634
LO55_2215
3-beta hydroxysteroid dehydrogenase/isomerase family protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
   
   0.634
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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