Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LO55_1257 | rpoA | LO55_1257 | LO55_1066 | Hypothetical protein; Glutathione S-transferase, N-terminal domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
| LO55_1257 | rpoB | LO55_1257 | LO55_1172 | Hypothetical protein; Glutathione S-transferase, N-terminal domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.968 |
| LO55_1257 | rpoC | LO55_1257 | LO55_1171 | Hypothetical protein; Glutathione S-transferase, N-terminal domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.970 |
| LO55_1257 | rpoD-2 | LO55_1257 | LO55_4794 | Hypothetical protein; Glutathione S-transferase, N-terminal domain protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.954 |
| LO55_1257 | rpoZ | LO55_1257 | LO55_2526 | Hypothetical protein; Glutathione S-transferase, N-terminal domain protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.973 |
| LO55_1592 | LO55_2196 | LO55_1592 | LO55_2196 | Cyclic nucleotide-binding domain protein. | Bacterial regulatory s, crp family protein. | 0.883 |
| LO55_1592 | rpoA | LO55_1592 | LO55_1066 | Cyclic nucleotide-binding domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
| LO55_1592 | rpoB | LO55_1592 | LO55_1172 | Cyclic nucleotide-binding domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.947 |
| LO55_1592 | rpoC | LO55_1592 | LO55_1171 | Cyclic nucleotide-binding domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.940 |
| LO55_1592 | rpoD-2 | LO55_1592 | LO55_4794 | Cyclic nucleotide-binding domain protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.912 |
| LO55_1592 | rpoZ | LO55_1592 | LO55_2526 | Cyclic nucleotide-binding domain protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.938 |
| LO55_1963 | rpoD-2 | LO55_1963 | LO55_4794 | Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.954 |
| LO55_2196 | LO55_1592 | LO55_2196 | LO55_1592 | Bacterial regulatory s, crp family protein. | Cyclic nucleotide-binding domain protein. | 0.883 |
| LO55_2196 | rpoA | LO55_2196 | LO55_1066 | Bacterial regulatory s, crp family protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
| LO55_2196 | rpoB | LO55_2196 | LO55_1172 | Bacterial regulatory s, crp family protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.947 |
| LO55_2196 | rpoC | LO55_2196 | LO55_1171 | Bacterial regulatory s, crp family protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.940 |
| LO55_2196 | rpoD-2 | LO55_2196 | LO55_4794 | Bacterial regulatory s, crp family protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.912 |
| LO55_2196 | rpoZ | LO55_2196 | LO55_2526 | Bacterial regulatory s, crp family protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.938 |
| LO55_958 | rpoA | LO55_958 | LO55_1066 | gyrI-like small molecule binding domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| LO55_958 | rpoB | LO55_958 | LO55_1172 | gyrI-like small molecule binding domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.964 |
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