STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4809Stress-induced bacterial acidophilic repeat motif family protein. (118 aa)    
Predicted Functional Partners:
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.611
LO55_890
Hypothetical protein.
  
  
 0.598
LO55_4811
Hypothetical protein.
       0.554
LO55_4808
Phasin family protein.
       0.474
LO55_3942
Glycosyl transferases group 1 family protein.
  
     0.438
LO55_63
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.417
LO55_65
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.417
LO55_1215
Sel1 repeat family protein.
  
     0.403
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.