STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4818Bacterial regulatory s, tetR family protein. (231 aa)    
Predicted Functional Partners:
LO55_4816
Putative lysine decarboxylase family protein; Belongs to the LOG family.
       0.794
LO55_4821
GMC oxidoreductase family protein.
 
 
 0.711
LO55_4822
Hypothetical protein.
 
     0.689
LO55_1201
Acetyltransferase family protein.
  
     0.614
LO55_4358
Thioesterase domain protein.
  
     0.597
LO55_4820
PGAP1-like family protein.
 
     0.550
LO55_4819
Response regulator.
       0.541
LO55_2370
Barstar family protein.
  
     0.518
LO55_2915
Hypothetical protein.
  
     0.489
LO55_686
Hypothetical protein.
  
     0.475
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.