STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4822Hypothetical protein. (177 aa)    
Predicted Functional Partners:
LO55_4821
GMC oxidoreductase family protein.
 
   
 0.953
LO55_4820
PGAP1-like family protein.
 
     0.810
LO55_4818
Bacterial regulatory s, tetR family protein.
 
     0.689
trmJ
RNA methyltransferase, TrmH, group 1 family protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
       0.625
LO55_4819
Response regulator.
       0.565
LO55_3139
Efp_adjacent_2: conserved hypothetical protein, PP_1857 family.
  
     0.516
LO55_4824
Fructose-1-6-bisphosphatase family protein; Belongs to the inositol monophosphatase superfamily.
       0.419
LO55_4816
Putative lysine decarboxylase family protein; Belongs to the LOG family.
       0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.