STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4833Outer membrane beta-barrel domain protein. (342 aa)    
Predicted Functional Partners:
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.863
LO55_377
Dienelactone hydrolase family protein.
  
 0.817
LO55_3675
Hypothetical protein.
  
 0.744
LO55_4284
Hypothetical protein.
  
 0.744
LO55_3597
Outer membrane family protein.
  
 
 0.719
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.694
LO55_1217
Gram-negative porin family protein.
  
 
 0.691
LO55_1216
Gram-negative porin family protein.
  
 
 0.684
LO55_1630
Gram-negative porin family protein.
    
 0.642
LO55_194
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
    
 0.642
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.