Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yihY-3yihY_not_rbn: YihY family inner membrane domain protein. (304 aa)    
Predicted Functional Partners:
LO55_2692
Pyridoxamine 5'-phosphate oxidase family protein.
 
    0.587
LO55_3967
Pyridoxamine 5'-phosphate oxidase family protein.
 
    0.523
LO55_4833
Outer membrane beta-barrel domain protein.
     
 0.494
LO55_4742
Low molecular weight phosphotyrosine phosphatase family protein.
  
  
 0.427
LO55_63
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
 
    0.426
LO55_1628
Universal stress family protein.
   
  
 0.424
LO55_2711
Universal stress family protein.
   
  
 0.424
arsC
arsC: arsenate reductase.
  
  
 0.402
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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