STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_4866Helix-turn-helix family protein. (243 aa)    
Predicted Functional Partners:
LO55_4867
GGDEF: diguanylate cyclase domain protein.
       0.718
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.682
mtnN
MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
  
  
  0.569
LO55_1391
Oxidoreductase molybdopterin binding domain protein.
  
     0.536
LO55_1654
tRNA-splicing ligase RtcB family protein.
  
     0.449
LO55_3321
N-acylglucosamine 2-epimerase.
  
     0.446
pyk
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
  0.442
LO55_1476
Hypothetical protein.
  
     0.433
LO55_4865
Gram-negative porin family protein.
       0.433
LO55_4210
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.404
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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