Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_4897Transglycosylase SLT domain protein. (301 aa)    
Predicted Functional Partners:
LO55_1957
Putative membrane protein.
 
    0.753
LO55_2927
smpA / OmlA family protein.
  
   
 0.737
LO55_2928
Hypothetical protein.
  
   
 0.737
LO55_2773
Putative exported signal peptide protein.
  
     0.723
LO55_3607
Hypothetical protein; nfeD-like C-terminal, partner-binding family protein.
  
    0.696
LO55_600
Putative membrane protein.
  
     0.690
LO55_4423
Toxin-antitoxin system toxin component, PIN family.
  
     0.683
LO55_929
Hypothetical protein.
 
     0.648
LO55_2385
Phasin: phasin family domain protein.
  
     0.646
LO55_2557
Gram-negative porin family protein.
  
     0.646
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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