Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ntrB-2ntrB: nitrate ABC transporter, permease protein. (307 aa)    
Predicted Functional Partners:
LO55_4928
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 0.999
LO55_4930
NMT1-like family protein.
 
 0.989
LO55_2627
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 
 0.980
LO55_2629
NMT1-like family protein.
 
 0.967
LO55_373
NMT1-like family protein.
 
 0.966
LO55_819
ABC transporter family protein.
 
 0.952
LO55_2055
ABC transporter family protein.
 
 0.951
LO55_2919
ABC transporter family protein.
 
 0.947
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
 0.946
LO55_817
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
 0.883
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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