Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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LO55_494Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (184 aa)    
Predicted Functional Partners:
LO55_495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
     0.874
LO55_496
ABC transporter family protein.
 
     0.800
LO55_493
Helix-turn-helix domain protein.
 
     0.785
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
    0.729
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
    0.692
LO55_932
Bacterial regulatory s, tetR family protein.
 
     0.523
LO55_921
Bacterial regulatory s, tetR family protein.
 
     0.521
LO55_492
Hypothetical protein.
       0.498
LO55_2391
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
 
  
 0.484
LO55_3686
Bacterial regulatory s, tetR family protein.
 
     0.480
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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