Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_4946Integral membrane TerC family protein. (352 aa)    
Predicted Functional Partners:
LO55_1102
Phosphoribosyl transferase family protein.
 
     0.543
LO55_219
terD domain protein.
 
   
 0.534
LO55_531
terD domain protein.
 
   
 0.532
LO55_4945
Divergent PAP2 family protein.
       0.531
LO55_1104
terD domain protein.
 
   
 0.505
LO55_1098
terD domain protein.
 
   
 0.498
LO55_4947
Hypothetical protein.
       0.488
LO55_533
terD domain protein.
 
   
 0.487
LO55_1103
C-C Bond Lyase of the TIM-Barrel fold family protein.
 
   
 0.472
LO55_1101
Haloacid dehalogenase-like hydrolase family protein.
 
     0.466
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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