STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_495Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein. (365 aa)    
Predicted Functional Partners:
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 0.938
LO55_977
enoyl-CoA hydratase/isomerase family protein.
  
 0.937
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
    0.894
LO55_494
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.874
LO55_4023
enoyl-CoA hydratase/isomerase family protein.
 
 0.830
LO55_496
ABC transporter family protein.
 
     0.824
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
    0.801
icmF
Hypothetical protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
 0.768
LO55_493
Helix-turn-helix domain protein.
 
     0.765
LO55_100
Electron transfer flavoFAD-binding domain protein.
  
 0.763
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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