Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_496ABC transporter family protein. (253 aa)    
Predicted Functional Partners:
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
  
  0.920
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
  
  0.866
LO55_818
Binding--dependent transport system inner membrane component family protein.
 
  
  0.846
LO55_2054
Binding--dependent transport system inner membrane component family protein.
 
  
  0.832
LO55_2920
Binding--dependent transport system inner membrane component family protein.
 
  
  0.828
LO55_495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
     0.824
LO55_674
ABC-2 transporter family protein.
  
 0.819
ntrB-2
ntrB: nitrate ABC transporter, permease protein.
 
  
  0.806
ntrB
ntrB: nitrate ABC transporter, permease protein.
 
  
  0.804
LO55_494
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.800
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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