STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_496ABC transporter family protein. (253 aa)    
Predicted Functional Partners:
LO55_498
Binding--dependent transport system inner membrane component family protein.
  
  0.931
LO55_674
ABC-2 transporter family protein.
  
 0.915
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
  
 0.901
LO55_4934
ABC-2 transporter family protein.
  
 0.872
LO55_2054
Binding--dependent transport system inner membrane component family protein.
  
  0.854
ntrB-2
ntrB: nitrate ABC transporter, permease protein.
 
  
  0.831
ntrB
ntrB: nitrate ABC transporter, permease protein.
  
  0.829
LO55_495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
    0.825
LO55_494
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.800
LO55_818
Binding--dependent transport system inner membrane component family protein.
 
  
  0.797
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.