Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4964Penicillin binding transpeptidase domain protein. (530 aa)    
Predicted Functional Partners:
LO55_4966
Penicillinase repressor family protein.
 
  
 0.853
LO55_4965
Penicillin binding transpeptidase domain protein.
 
    
0.792
LO55_3510
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
  
  0.563
LO55_4967
Short chain dehydrogenase family protein.
       0.526
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.523
LO55_1631
Beta-lactamase family protein.
  
   
 0.495
LO55_3511
Penicillinase repressor family protein.
    
 0.444
LO55_338
Penicillin binding transpeptidase domain protein.
    
 0.404
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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