Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_4967Short chain dehydrogenase family protein. (235 aa)    
Predicted Functional Partners:
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.916
LO55_1548
Glutamine amidotransferases class-II family protein.
     
 0.772
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.770
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 0.615
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.607
LO55_3861
Ankyrin repeat family protein.
    
  0.589
LO55_4230
Ankyrin repeat family protein.
    
  0.589
LO55_4965
Penicillin binding transpeptidase domain protein.
       0.566
LO55_4966
Penicillinase repressor family protein.
       0.566
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
   0.560
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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